PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00056540-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB_related
Protein Properties Length: 78aa    MW: 8658.63 Da    PI: 7.5257
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00056540-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.73.1e-091053344
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
   Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                      +WT+e  +++ +a + +  +   +W  +a+++  g++++++k ++
  PSME_00056540-RA 10 NWTAEQNKQFEKALAIYDRDtadRWQNVASMVT-GKSPEEVKRHY 53
                      8*****************99************9.**********9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.484661IPR017884SANT domain
SMARTSM007173.5E-9759IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.6E-7961IPR009057Homeodomain-like
CDDcd001673.06E-81057No hitNo description
PfamPF002492.4E-71053IPR001005SANT/Myb domain
SuperFamilySSF466891.57E-131063IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 78 aa     Download sequence    Send to blast
MASSSNNGTN WTAEQNKQFE KALAIYDRDT ADRWQNVASM VTGKSPEEVK RHYEILLEDL  60
NGIAAGKVPI PKYKSSAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-30177177RADIALIS
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010690864.11e-32PREDICTED: protein RADIALIS-like 3
SwissprotQ58FS32e-31RAD_ANTMA; Transcription factor RADIALIS
TrEMBLD5ADC16e-33D5ADC1_PICSI; Putative uncharacterized protein
STRINGVIT_03s0063g02670.t011e-31(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.11e-30RAD-like 6